Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Dendritic Cells

MeSH Description

ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Sample

source_name

Monocyte-derived dendritic cells

donor id

DC1

cell type

Monocyte-derived dendritic cells

treatment

NI

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

DNA from infected and non-infected DCs was extracted using the PureGene DNA extraction kit (Gentra Systems). ATAC-seq libraries were generated from 50,000 cells, as previously described (Buenrostro et al., 2013).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

77603306

Reads aligned (%)

48.6

Duplicates removed (%)

45.7

Number of peaks

10239 (qval < 1E-05)

hg19

Number of total reads

77603306

Reads aligned (%)

48.2

Duplicates removed (%)

46.3

Number of peaks

9845 (qval < 1E-05)