SRX4289096
GSM3212934: D7 B cell Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
B-cell (CD19+)
Tissue
Blood
Lineage
primaryCells
Description
B Cell , CD19+

Attributes by original data submitter

Sample

source_name
CD19 B cells
cell type
CD19 B cells
ID
Donor 7
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was isolated from B cells and LCLs with Trizol. Libraries were prepared using Kapa Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22245570
Reads aligned (%)
88.2
Duplicates removed (%)
1.1
Number of peaks
816 (qval < 1E-05)

hg19

Number of total reads
22245570
Reads aligned (%)
87.1
Duplicates removed (%)
1.1
Number of peaks
509 (qval < 1E-05)

Base call quality data from DBCLS SRA