Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic acinar cells
NA
NA

Attributes by original data submitter

Sample

source_name
adult acinar cells
strain
C57Bl6/J wildtype
cell type
adult acinar cells
chip antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After formalin fixation, fragmented DNA was precipitated with specific antibodies, reverse-crosslinked and extracted with a PCR purification kit from Qiagen according to the manufacture´s instructions. NEBNext Ultra DNA Library Prep Kit for Illumina according to the manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
47511153
Reads aligned (%)
98.4
Duplicates removed (%)
13.8
Number of peaks
324 (qval < 1E-05)

mm9

Number of total reads
47511153
Reads aligned (%)
98.2
Duplicates removed (%)
13.7
Number of peaks
325 (qval < 1E-05)

Base call quality data from DBCLS SRA