Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Acinar-to-ductal metaplasia
NA
NA

Attributes by original data submitter

Sample

source_name
acinar-to-ductal metaplasia
strain
C57Bl6/J wildtype
cell type
acinar-to-ductal metaplasia
chip antibody
H3K4me3 (Cell Signaling, 9751)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After formalin fixation, fragmented DNA was precipitated with specific antibodies, reverse-crosslinked and extracted with a PCR purification kit from Qiagen according to the manufacture´s instructions. NEBNext Ultra DNA Library Prep Kit for Illumina according to the manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
39757339
Reads aligned (%)
76.8
Duplicates removed (%)
31.0
Number of peaks
1043 (qval < 1E-05)

mm9

Number of total reads
39757339
Reads aligned (%)
76.5
Duplicates removed (%)
30.9
Number of peaks
961 (qval < 1E-05)

Base call quality data from DBCLS SRA