Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic acinar cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic acinar cells
strain
C57Bl6/J wildtype
cell type
embryonic acinar cells
chip antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After formalin fixation, fragmented DNA was precipitated with specific antibodies, reverse-crosslinked and extracted with a PCR purification kit from Qiagen according to the manufacture´s instructions. NEBNext Ultra DNA Library Prep Kit for Illumina according to the manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27136969
Reads aligned (%)
94.5
Duplicates removed (%)
11.4
Number of peaks
364 (qval < 1E-05)

mm9

Number of total reads
27136969
Reads aligned (%)
94.3
Duplicates removed (%)
11.4
Number of peaks
331 (qval < 1E-05)

Base call quality data from DBCLS SRA