Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Innate lymphoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
CCR6+ILC3 from SI
strain
C57BL/6
tissue
innate lymphoid cells of the small intestine (SI)
genotype
wild type
treatment
steady state

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells harvest was followed by a transposition reaction and purification (Buenrostro et al. Curr Protoc Mol Biol. 2015) Prepared as in Buenrostro et al. Curr Protoc Mol Biol. 2015

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
21176216
Reads aligned (%)
91.6
Duplicates removed (%)
40.8
Number of peaks
23306 (qval < 1E-05)

mm9

Number of total reads
21176216
Reads aligned (%)
91.5
Duplicates removed (%)
41.0
Number of peaks
23276 (qval < 1E-05)

Base call quality data from DBCLS SRA