SRX4277333
GSM3208770: AD14 ACCACTGT: ILC1 2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Innate lymphoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
ILC1 and NK from SI
strain
C57BL/6
tissue
innate lymphoid cells of the small intestine (SI)
genotype
wild type
treatment
steady state

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells harvest was followed by a transposition reaction and purification (Buenrostro et al. Curr Protoc Mol Biol. 2015) Prepared as in Buenrostro et al. Curr Protoc Mol Biol. 2015

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16767182
Reads aligned (%)
92.9
Duplicates removed (%)
30.9
Number of peaks
26732 (qval < 1E-05)

mm9

Number of total reads
16767182
Reads aligned (%)
92.8
Duplicates removed (%)
31.1
Number of peaks
26725 (qval < 1E-05)

Base call quality data from DBCLS SRA