SRX4275524
ATAC-seq from human colonocytes inoculated with microbiome from Ind5 for 2 hrs (replicate 2)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Colonic epithelial cells
NA
NA

Attributes by original data submitter

Sample

isolate
2950, lot 9810
age
21 weeks gestation
biomaterial_provider
ScienCell
sex
male
tissue
colon
cell_type
colonic epithelial cells
treatment
Microbiome from Ind5 for 2hrs

Sequenced DNA Library

library_name
ATAC_Col5_2_rep2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
115150081
Reads aligned (%)
92.6
Duplicates removed (%)
15.7
Number of peaks
13564 (qval < 1E-05)

hg19

Number of total reads
115150081
Reads aligned (%)
91.7
Duplicates removed (%)
16.2
Number of peaks
13081 (qval < 1E-05)

Base call quality data from DBCLS SRA