SRX4275502
ATAC-seq from human colonocytes inoculated with microbiome from Ind3 for 2 hrs (replicate 2)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Colonic epithelial cells
NA
NA

Attributes by original data submitter

Sample

isolate
2950, lot 9810
age
21 weeks gestation
biomaterial_provider
ScienCell
sex
male
tissue
colon
cell_type
colonic epithelial cells
treatment
Microbiome from Ind3 for 2hrs

Sequenced DNA Library

library_name
ATAC_Col3_2_rep2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44968253
Reads aligned (%)
90.8
Duplicates removed (%)
13.9
Number of peaks
39068 (qval < 1E-05)

hg19

Number of total reads
44968253
Reads aligned (%)
90.1
Duplicates removed (%)
14.1
Number of peaks
38809 (qval < 1E-05)

Base call quality data from DBCLS SRA