SRX4275454
ATAC-seq from human colonocytes inoculated with microbiome from Ind1 for 2 hrs (replicate 1)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Colonic epithelial cells
NA
NA

Attributes by original data submitter

Sample

isolate
2950, lot9810
age
21 weeks gestation
biomaterial_provider
ScienCell
sex
male
tissue
colon
cell_type
colonic epithelial cells
treatment
Microbiome from Ind1 for 2hr

Sequenced DNA Library

library_name
ATAC_Col1_2_rep1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
96085326
Reads aligned (%)
94.8
Duplicates removed (%)
14.2
Number of peaks
21221 (qval < 1E-05)

hg19

Number of total reads
96085326
Reads aligned (%)
93.9
Duplicates removed (%)
14.6
Number of peaks
20674 (qval < 1E-05)

Base call quality data from DBCLS SRA