SRX425997
GSM1306054: Ly2 Input control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

source_name
Ly2 Input_control
cell line
LY2
cell type
breast cancer
treatment
Untreated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were generated from 10 ng of ChIP output DNA by adaptor ligation, gel purification, and cycles of PCR as described by Illumina.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6400031
Reads aligned (%)
95.3
Duplicates removed (%)
2.5
Number of peaks
130 (qval < 1E-05)

hg19

Number of total reads
6400031
Reads aligned (%)
93.9
Duplicates removed (%)
5.0
Number of peaks
203 (qval < 1E-05)

Base call quality data from DBCLS SRA