Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells
cell line
V6.5
mouse strain
C57Bl/6-129
cell type
Embryonic Stem Cells
genotype
Cdk12 -/-: Cdk12 Tg+
clone number
c.36
dox treatment
+Dox
primary antibody
8WG16 (Abcam ab817)
secondary antibody
N/A
barcode
ACGGTGAGAGAG
rin value
N/A

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
17013173
Reads aligned (%)
76.2
Duplicates removed (%)
7.5
Number of peaks
68 (qval < 1E-05)

mm9

Number of total reads
17013173
Reads aligned (%)
76.1
Duplicates removed (%)
7.6
Number of peaks
63 (qval < 1E-05)

Base call quality data from DBCLS SRA