ChIP-Atlas: SRX4226207

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: ATAC-Seq
Antigen: ATAC-Seq

Cell type

Cell type Class: Neural
Cell type: Oligodendrocyte progenitor cells
NA: NA

Attributes by original data submitter

Sample

source_name: oli-neu
tissue: oli-neu

Sequenced DNA Library

library_strategy: ATAC-seq
library_source: GENOMIC
library_selection: other
library_construction_protocol: The cells were collected with accutase and lysed with ATAC-seq lysis buffer (0.1% IGEPAL) ATAC-seq (Buenrostro et al., 2013)

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 15201928
Reads aligned (%): 67.6
Duplicates removed (%): 9.4
Number of peaks: 22128 (qval < 1E-05)

mm9

Number of total reads: 15201928
Reads aligned (%): 67.5
Duplicates removed (%): 9.4
Number of peaks: 22119 (qval < 1E-05)

Base call quality data from DBCLS SRA