Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
MS1 Cell line
stimulation
Yes, BMP9/10 recombinant protein
antibody for ip
SMAD4 (Cell Signaling)
cell line
MS1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using Cell Signaling SimpleChIP Plus Sonication Kit and Smad4 antibody (Cell Signaling 46535). TruSeq ChIP Library Preparation Kit (Illumina IP-202-1012) 10 ng starting material was used for library prep. DNA quantity was measured using Qubit DNA HS kit (Thermo 32851). Libraries were sequenced using NextSeq 500 High Output v2 kit. Library quality and quantity was assessed using Agilent DNA 1000 chip (Agilent 5067-1504) and Qubit DNA HS kit respectively

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
26871435
Reads aligned (%)
81.5
Duplicates removed (%)
8.5
Number of peaks
3233 (qval < 1E-05)

mm9

Number of total reads
26871435
Reads aligned (%)
81.4
Duplicates removed (%)
8.5
Number of peaks
3207 (qval < 1E-05)

Base call quality data from DBCLS SRA