SRX4211811
GSM3188734: RXL input control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
NALM-6
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NALM6 leukemia cell line
antibody
none
cell line
NALM6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using Qiagen kit Libraries were constructed using standard Illumina procedures

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30917620
Reads aligned (%)
99.2
Duplicates removed (%)
8.1
Number of peaks
543 (qval < 1E-05)

hg19

Number of total reads
30917620
Reads aligned (%)
98.5
Duplicates removed (%)
8.7
Number of peaks
732 (qval < 1E-05)

Base call quality data from DBCLS SRA