SRX4197907
GSM3187449: Donor3 P8 Rep4 ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic cells
population
CD49d-Band3+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Digitonin-based lysis FAST-ATAC-seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57137711
Reads aligned (%)
40.1
Duplicates removed (%)
10.0
Number of peaks
5661 (qval < 1E-05)

hg19

Number of total reads
57137711
Reads aligned (%)
39.8
Duplicates removed (%)
10.3
Number of peaks
5570 (qval < 1E-05)

Base call quality data from DBCLS SRA