SRX4197905
GSM3187447: Donor3 P7 Rep4 ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic cells
population
CD49dlo_Band3+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Digitonin-based lysis FAST-ATAC-seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41111240
Reads aligned (%)
56.7
Duplicates removed (%)
7.0
Number of peaks
6254 (qval < 1E-05)

hg19

Number of total reads
41111240
Reads aligned (%)
56.3
Duplicates removed (%)
7.2
Number of peaks
6210 (qval < 1E-05)

Base call quality data from DBCLS SRA