SRX4197899
GSM3187441: Donor3 P4 Rep3 ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic cells
population
CD71+_CD235+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Digitonin-based lysis FAST-ATAC-seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20370178
Reads aligned (%)
97.9
Duplicates removed (%)
13.9
Number of peaks
24264 (qval < 1E-05)

hg19

Number of total reads
20370178
Reads aligned (%)
97.2
Duplicates removed (%)
14.2
Number of peaks
24113 (qval < 1E-05)

Base call quality data from DBCLS SRA