SRX4197881
GSM3187423: Donor1 P2 Rep1 ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic cells
population
CD71+_CD235-

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Digitonin-based lysis FAST-ATAC-seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10151073
Reads aligned (%)
98.4
Duplicates removed (%)
19.8
Number of peaks
24042 (qval < 1E-05)

hg19

Number of total reads
10151073
Reads aligned (%)
98.0
Duplicates removed (%)
19.9
Number of peaks
23828 (qval < 1E-05)

Base call quality data from DBCLS SRA