Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me2

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
VL3-3M2 cell line (dusRC)
strain
C57BL/6
sample type
Cell line
cell type/line
VL3-3M2
age
NA
genotype/variation
dusRC
antibody
H3K9me2 (abcam ab1220)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nucleosomes were obtained by micrococcal nuclease digestion and antibody added. Pulldown was performed using protein A-agarose and bound DNA was purified by phenol-chloroform extraction Library preparation and high-throughput sequencing were performed by the Duke Center for Genomic and Computational Biology Core Facility

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
87648108
Reads aligned (%)
97.7
Duplicates removed (%)
18.6
Number of peaks
15502 (qval < 1E-05)

mm9

Number of total reads
87648108
Reads aligned (%)
97.6
Duplicates removed (%)
18.6
Number of peaks
15135 (qval < 1E-05)

Base call quality data from DBCLS SRA