Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain/background
C57BL/6
genotype/variation
Wap-E12-Ramp3
Stage
Lactation day 10
tissue
Mammary gland
chip antibody
H3K27ac (Abcam, ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
50396328
Reads aligned (%)
99.0
Duplicates removed (%)
7.2
Number of peaks
32895 (qval < 1E-05)

mm9

Number of total reads
50396328
Reads aligned (%)
98.8
Duplicates removed (%)
7.2
Number of peaks
32950 (qval < 1E-05)

Base call quality data from DBCLS SRA