SRX4169579
GSM3176700: ChIP-seq-delE1-delE2-delE3-L10-GR rep3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr3c1

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain/background
C57BL/6
genotype/variation
Wap-delE1-delE2-delE3
Stage
Lactation day 10
tissue
Mammary gland
chip antibody
GR (Thermo Scientific, PA1-511A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25088343
Reads aligned (%)
97.8
Duplicates removed (%)
8.8
Number of peaks
19468 (qval < 1E-05)

mm9

Number of total reads
25088343
Reads aligned (%)
97.6
Duplicates removed (%)
8.9
Number of peaks
19531 (qval < 1E-05)

Base call quality data from DBCLS SRA