Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Stat5a

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain/background
C57BL/6
genotype/variation
wild-type
Stage
Lactation day 10
tissue
Mammary gland
chip antibody
STAT5A (Santa Cruz Biotechnology, sc-1081)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
61345385
Reads aligned (%)
98.2
Duplicates removed (%)
14.3
Number of peaks
45458 (qval < 1E-05)

mm9

Number of total reads
61345385
Reads aligned (%)
98.0
Duplicates removed (%)
14.3
Number of peaks
45499 (qval < 1E-05)

Base call quality data from DBCLS SRA