SRX4169541
GSM3176657: ChIP-seq-WT-L1-GR-rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr3c1

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain/background
C57BL/6
genotype/variation
wild-type
Stage
Lactation day 1
tissue
Mammary gland
chip antibody
GR (Thermo Scientific, PA1-511A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52789519
Reads aligned (%)
97.9
Duplicates removed (%)
10.3
Number of peaks
3477 (qval < 1E-05)

mm9

Number of total reads
52789519
Reads aligned (%)
97.7
Duplicates removed (%)
10.2
Number of peaks
3550 (qval < 1E-05)

Base call quality data from DBCLS SRA