Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse thymus cells
subpopulation
DP t cell
turmor stage
WT
turmor cell or normal cells
normal

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Blast- and LSC-enriched subpopulations were collected by FACS sorting and genomic DNA were extracted using DNA micro kit or DNA mini kit (Qiagen) Genomic DNA was digested with MspI (Fermentas), followed by end repair, adapter ligation and bisulfite modification (QIAGEN, #59104). The converted DNA library was sequenced on HiSeq 4000 (illumina) after two–round PCR amplification and size-selection

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
3933439
Reads aligned (%)
72.0
Coverage rate (×)
0.3
Number of hyper MRs
54894 (qval < 1E-05)

mm9

Number of total reads
3933439
Reads aligned (%)
72.0
Coverage rate (×)
0.3
Number of hyper MRs
54792 (qval < 1E-05)

Base call quality data from DBCLS SRA