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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: F9
ATCC
MeSH
RIKEN BRC
SRX4159332
GSM3173740: Zfp595; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Pluripotent stem cell
Cell type
F9
Tissue
Testis
Disease
Embryonal Carcinoma; Testicular Teratoma
Attributes by original data submitter
Sample
source_name
F9 EC cells
cell type
F9 EC cells
overexpression
Zfp595
chip antibody
HA (ab9110)
tag
C-3XHA
ChIP
O'Geen et al. 2010
mapping
Bowtie (-5 3 --best)
peak calling parameters
p-value < 1e-10, enrichment > 10
input
F9_Input + HA_control
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was purified and immunoprecipitated according to previously described protocols as indicated in the sample information. DNA SMART kit (Takara) or Truseq (Illumina)
Sequencing Platform
instrument_model
Illumina HiSeq 3000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
46963440
Reads aligned (%)
95.6
Duplicates removed (%)
29.3
Number of peaks
10179 (qval < 1E-05)
mm9
Number of total reads
46963440
Reads aligned (%)
95.4
Duplicates removed (%)
29.3
Number of peaks
7974 (qval < 1E-05)
Base call quality data from
DBCLS SRA