Antigen

Antigen Class

TFs and others

Antigen

Epitope tags

Cell type

Cell type Class

Pluripotent stem cell

Cell type

F9

Tissue

Testis

Disease

Embryonal Carcinoma; Testicular Teratoma

Sample

source_name

F9 EC cells

cell type

F9 EC cells

overexpression

Zfp273

chip antibody

HA (ab9110)

tag

C-3XHA

ChIP

O'Geen et al. 2010

mapping

Bowtie (-5 3 --best)

peak calling parameters

p-value < 1e-10, enrichment > 20

input

F9_Input + HA_control

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads

57557940

Reads aligned (%)

93.7

Duplicates removed (%)

17.2

Number of peaks

1242 (qval < 1E-05)

mm9

Number of total reads

57557940

Reads aligned (%)

93.5

Duplicates removed (%)

17.2

Number of peaks

1310 (qval < 1E-05)