SRX4152297
GSM3170881: CC100-C1-2-27 [CC100 scATAC-seq]; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic cells
celltype
primary hematopoietic cells
supplemented with
CC100

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP40 lysis Single cell ATAC-seq (C1 Fluidigm)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
1819923
Reads aligned (%)
97.0
Duplicates removed (%)
84.8
Number of peaks
9 (qval < 1E-05)

hg19

Number of total reads
1819923
Reads aligned (%)
96.2
Duplicates removed (%)
85.2
Number of peaks
5 (qval < 1E-05)

Base call quality data from DBCLS SRA