SRX4151090
GSM3169728: BulkATAC-NextSeq-01-S23; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
donor 4_CD34+ hematopoietic cells
donor id
donor 4
cell type
primary hematopoietic cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP 40 lysis ATAC-seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
1649893
Reads aligned (%)
64.0
Duplicates removed (%)
54.7
Number of peaks
14 (qval < 1E-05)

hg19

Number of total reads
1649893
Reads aligned (%)
63.9
Duplicates removed (%)
54.8
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA