SRX4151079
GSM3169717: BulkATAC-MiSeq-11-S10; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
donor 3_CD34+ hematopoietic cells
donor id
donor 3
cell type
primary hematopoietic cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP 40 lysis ATAC-seq

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
396686
Reads aligned (%)
97.5
Duplicates removed (%)
28.3
Number of peaks
27 (qval < 1E-05)

hg19

Number of total reads
396686
Reads aligned (%)
97.2
Duplicates removed (%)
28.6
Number of peaks
29 (qval < 1E-05)

Base call quality data from DBCLS SRA