SRX4150883
GSM3169526: C1 C9-D6 09 S116 [TF1 clones scATAC]; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
TF-1
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

source_name
ATCC
cell line
TF1
cell type
hematopoietic cell line

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP40 lysis Single cell ATAC-seq (C1 Fluidigm)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
1626104
Reads aligned (%)
96.7
Duplicates removed (%)
80.9
Number of peaks
5 (qval < 1E-05)

hg19

Number of total reads
1626104
Reads aligned (%)
96.5
Duplicates removed (%)
81.1
Number of peaks
4 (qval < 1E-05)

Base call quality data from DBCLS SRA