SRX4150706
GSM3169365: S0001 bulk1 bulk G000 [TF1 clones ATAC-seq]; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
TF-1
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

source_name
ATCC
cell line
TF1
cell type
hematopoietic cell line

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP 40 lysis ATAC-seq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9157531
Reads aligned (%)
64.3
Duplicates removed (%)
47.6
Number of peaks
2156 (qval < 1E-05)

hg19

Number of total reads
9157531
Reads aligned (%)
64.3
Duplicates removed (%)
47.8
Number of peaks
2192 (qval < 1E-05)

Base call quality data from DBCLS SRA