Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
cell type
H1 hESC-derived neural progenitor cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% formaldehyde. Chromatin was shared with Covaris S2 sonicator. ChIP was performed using LowCell# ChIP kit (Diagenode). H3K27ac (Abcam, ab4729) and H3K27me3 antibodies (EMD Millipore, 07-449) were used. Library construction was performed using ThruPLEX DNA-seq kit (Rubicon Genomics) accoring to manufacture's protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
33157823
Reads aligned (%)
98.2
Duplicates removed (%)
14.9
Number of peaks
1117 (qval < 1E-05)

hg19

Number of total reads
33157823
Reads aligned (%)
97.4
Duplicates removed (%)
16.2
Number of peaks
1158 (qval < 1E-05)

Base call quality data from DBCLS SRA