Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
cell type
H1 hESC-derived neural progenitor cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cell nuclei were isolated as described previously (Buenrostro et al., 2013). 50,000 cell nuclei were used for library construction. Chromatin was tagmented using Illumina Nextera kit as described previously (Buenrostro et al., 2013).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
42326401
Reads aligned (%)
42.0
Duplicates removed (%)
48.7
Number of peaks
4541 (qval < 1E-05)

hg19

Number of total reads
42326401
Reads aligned (%)
41.9
Duplicates removed (%)
48.7
Number of peaks
4467 (qval < 1E-05)

Base call quality data from DBCLS SRA