SRX4133990
"repli-seq of HeLa-S3:Transfected with E-BAC sox17-3.6 , Early S fraction"

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

gap_accession
phs001520
gap_parent_phs
phs000640
submitter handle
OD_HeLaCells
biospecimen repository
OD_HeLaCells
study name
Bacterial Artificial Chromosomes Establish Replication Timing and Sub-Nuclear Compartment de novo as Extra-Chromosomal Vectors
study design
Methods
biospecimen repository sample id
Sample_6
submitted sample id
Sample_6
submitted subject id
HeLa_1
gap_sample_id
2921296
gap_subject_id
791085
sex
female
body site
Cervix
analyte type
DNA
is tumor
Yes
gap_consent_code
1
gap_consent_short_name
HMB

Sequenced DNA Library

library_name
sox17-3.6.E
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10355190
Reads aligned (%)
99.5
Duplicates removed (%)
1.0
Number of peaks
76 (qval < 1E-05)

hg19

Number of total reads
10355190
Reads aligned (%)
99.3
Duplicates removed (%)
1.2
Number of peaks
104 (qval < 1E-05)

Base call quality data from DBCLS SRA