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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4133973
"repli-seq of HeLa-S3:Transfected with E-BAC BAC7.rep1 , Late S fraction"
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
gap_accession
phs001520
gap_parent_phs
phs000640
submitter handle
OD_HeLaCells
biospecimen repository
OD_HeLaCells
study name
Bacterial Artificial Chromosomes Establish Replication Timing and Sub-Nuclear Compartment de novo as Extra-Chromosomal Vectors
study design
Methods
biospecimen repository sample id
Sample_25
submitted sample id
Sample_25
submitted subject id
HeLa_1
gap_sample_id
2921279
gap_subject_id
791085
sex
female
body site
Cervix
analyte type
DNA
is tumor
Yes
gap_consent_code
1
gap_consent_short_name
HMB
Sequenced DNA Library
library_name
BAC7.rep1.L
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
7422578
Reads aligned (%)
93.5
Duplicates removed (%)
3.1
Number of peaks
244 (qval < 1E-05)
hg19
Number of total reads
7422578
Reads aligned (%)
92.8
Duplicates removed (%)
4.1
Number of peaks
212 (qval < 1E-05)
Base call quality data from
DBCLS SRA