SRX4120219
ChIPseq XPCwt XPC ATRA rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

Isolate
18809580)
Age
7 yo
Biomaterial provider
Coriell Institute
Sex
male
Tissue
Skin
Cell type
Fibroblast
Desease
Xeroderma pigmentosum, complementation group C
Treatment
ATRA (All-Trans Retinoic Acid)
Sample description
Expression of a GFP-tagged XPC
Experiment
ChIPseq
Antibody (ChIPseq)
XPC
Replicate
1
Figure
main

Sequenced DNA Library

library_name
NLM-93 B4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37057909
Reads aligned (%)
99.9
Duplicates removed (%)
68.5
Number of peaks
322 (qval < 1E-05)

hg19

Number of total reads
37057909
Reads aligned (%)
99.8
Duplicates removed (%)
69.4
Number of peaks
338 (qval < 1E-05)

Base call quality data from DBCLS SRA