SRX4120193
GSM3151648: SER5 CTRL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Gonad
Cell type
RMG-I
Primary Tissue
Ovary
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
RMG-1
experiment
CHIP-seq
chip antibody
ACTIVE MOTIF MOUSE MONOCLONAL (61086)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14218160
Reads aligned (%)
88.4
Duplicates removed (%)
39.8
Number of peaks
982 (qval < 1E-05)

hg19

Number of total reads
14218160
Reads aligned (%)
87.9
Duplicates removed (%)
40.2
Number of peaks
956 (qval < 1E-05)

Base call quality data from DBCLS SRA