SRX4120191
GSM3151646: SER2 CTRL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Gonad
Cell type
RMG-I
Primary Tissue
Ovary
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
RMG-1
experiment
CHIP-seq
chip antibody
ACTIVE MOTIF MOUSE MONOCLONAL (610864

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18429712
Reads aligned (%)
91.3
Duplicates removed (%)
46.9
Number of peaks
951 (qval < 1E-05)

hg19

Number of total reads
18429712
Reads aligned (%)
90.7
Duplicates removed (%)
47.5
Number of peaks
911 (qval < 1E-05)

Base call quality data from DBCLS SRA