SRX4117265
GSM3151271: input 2-4 hr; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
2-4 hr old Oregon R embryos
devepmental stage
2-4 hr old embryo
antibodies
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the TruSeq kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
21366726
Reads aligned (%)
96.1
Duplicates removed (%)
7.5
Number of peaks
1960 (qval < 1E-05)

dm3

Number of total reads
21366726
Reads aligned (%)
97.4
Duplicates removed (%)
5.3
Number of peaks
4068 (qval < 1E-05)

Base call quality data from DBCLS SRA