Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD23-positive Marginal Zone B cells isolated from WT NOD mouse
strain
NOD-Foxp3GFP-Rag1-/-
cell type
B-cell
cell subtype
Marginal Zone B cells
cd23
positive
cd21
negative
model
wildtype
derivation
wildtype

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
MZ or FO B cells were FACS-sorted and treated with Transposase, with Illumina adapters inserted into open chromatin regions. Illumina adapter specific PCR primers were used to amplify the library

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
9476193
Reads aligned (%)
57.6
Duplicates removed (%)
30.6
Number of peaks
14271 (qval < 1E-05)

mm9

Number of total reads
9476193
Reads aligned (%)
57.5
Duplicates removed (%)
30.7
Number of peaks
14273 (qval < 1E-05)

Base call quality data from DBCLS SRA