Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Follicular B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD23-positive Follicular B cells isolated from B1411 mouse
strain
NOD-Foxp3GFP-Rag1-/-
cell type
B-cell
cell subtype
Follicular B cells
cd23
positive
cd21
negative
model
B1411
derivation
nuclear transfer

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
MZ or FO B cells were FACS-sorted and treated with Transposase, with Illumina adapters inserted into open chromatin regions. Illumina adapter specific PCR primers were used to amplify the library

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
7562811
Reads aligned (%)
57.7
Duplicates removed (%)
33.0
Number of peaks
13478 (qval < 1E-05)

mm9

Number of total reads
7562811
Reads aligned (%)
57.6
Duplicates removed (%)
33.2
Number of peaks
13478 (qval < 1E-05)

Base call quality data from DBCLS SRA