Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
undifferentiated human embryonic stem cell line H9
originating cell line
H9
cell type
hESC line H9, differentiation at Day 0
treatment and stage
Differentiation at Day 0

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Around 50,000 cells were used for each transposition reaction. Nuclei were prepared prior to transposition. Sequencing libraries were constructed using a modified version of the Illumina Nextera DNA Sample prep kit.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
45281372
Reads aligned (%)
89.4
Duplicates removed (%)
36.9
Number of peaks
5801 (qval < 1E-05)

hg19

Number of total reads
45281372
Reads aligned (%)
89.0
Duplicates removed (%)
37.2
Number of peaks
5701 (qval < 1E-05)

Base call quality data from DBCLS SRA