Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HIF1A

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3 cells
protocol
Hypoxia_siCtrl
cell line
PC3 cells
tumor type
prostate cancer
antibody
HIF1A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. ChIP-enriched DNA was used for library creation with the Rubicon ThruPLEX-FD kit and sequenced (75 bp single-end reads).

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
65222368
Reads aligned (%)
34.1
Duplicates removed (%)
64.1
Number of peaks
22112 (qval < 1E-05)

hg38

Number of total reads
65222368
Reads aligned (%)
35.3
Duplicates removed (%)
63.0
Number of peaks
22182 (qval < 1E-05)

Base call quality data from DBCLS SRA