Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic mouse limb buds
tissues
embryonic mouse limb buds
chip-seq antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mouse embryonic limb buds lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibodies ChIP-seq DNA libraries wereprepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
71921962
Reads aligned (%)
98.2
Duplicates removed (%)
49.3
Number of peaks
649 (qval < 1E-05)

mm9

Number of total reads
71921962
Reads aligned (%)
98.0
Duplicates removed (%)
49.3
Number of peaks
766 (qval < 1E-05)

Base call quality data from DBCLS SRA