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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Embryonic limb
ATCC
MeSH
RIKEN BRC
SRX4089067
GSM3143387: Sox9null E11.5 H3K4me3; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA
Attributes by original data submitter
Sample
source_name
embryonic mouse limb buds
tissues
embryonic mouse limb buds
chip-seq antibody
H3K4me3 (ab8580,Abcam)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mouse embryonic limb buds lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibodies ChIP-seq DNA libraries wereprepared for sequencing using standard Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
55667711
Reads aligned (%)
98.0
Duplicates removed (%)
36.3
Number of peaks
22527 (qval < 1E-05)
mm9
Number of total reads
55667711
Reads aligned (%)
97.7
Duplicates removed (%)
36.2
Number of peaks
22556 (qval < 1E-05)
Base call quality data from
DBCLS SRA