Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Others
Cell type
Fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
CRL7250 SS18 ATAC
cell line
CRL7250
cell type
fibroblast cell line
infected with
V5-SS18

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were harvested following 48-hour exposure to lentivirus and 5 days of selection with 2 µg/ml of puromycin and ATAC-seq experiments were performed as previously described (Buenrostro et al., 2015). All library prep and sequencing were 75bp paired end on Illuminia Nextseq 500

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
68656546
Reads aligned (%)
69.6
Duplicates removed (%)
32.5
Number of peaks
64651 (qval < 1E-05)

hg19

Number of total reads
68656546
Reads aligned (%)
69.3
Duplicates removed (%)
32.7
Number of peaks
64154 (qval < 1E-05)

Base call quality data from DBCLS SRA