Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Small intestinal organoids
NA
NA

Attributes by original data submitter

Sample

source_name
Small intestinal organoids
tissue
Small intestinal organoids
cell type enrichment
Stem cell enriched (+CHIR+VPA)
assay
ATAC-seq
chip antibody
NA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
11900684
Reads aligned (%)
79.2
Duplicates removed (%)
26.3
Number of peaks
12664 (qval < 1E-05)

mm9

Number of total reads
11900684
Reads aligned (%)
79.1
Duplicates removed (%)
26.6
Number of peaks
12652 (qval < 1E-05)

Base call quality data from DBCLS SRA