SRX4047179
GSM3132643: Gro Input; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
7h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Stage 11 embryos
chip antibody
none
genotype
w1118
Stage
stage 11 embryo

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Hand-selected embryos were fixed with 1.8% formaldehyde. Lysates were clarified from sonicated nuclei andTF-DNA complexes isolated with an antibody. Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
11679339
Reads aligned (%)
93.1
Duplicates removed (%)
15.3
Number of peaks
5269 (qval < 1E-05)

dm3

Number of total reads
11679339
Reads aligned (%)
93.3
Duplicates removed (%)
13.9
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA