Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 cells
tissue
C2C12 cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was extracted using Trizol, as per the manufacturer's instructions. Histone-DNA complexes for ChIP-Seq were recovered by immunoprecipitation using cell lysates from clarified sonicated nuclei. Libraries were constructed as per the manufacturers instructions. For RNASeq: 500 ng RNA was used with the Illumina stranded total RNASeq protocol; whereas, for ChIP-Seq the Illumina Nextera protocol was used.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
18658063
Reads aligned (%)
85.3
Duplicates removed (%)
32.6
Number of peaks
509 (qval < 1E-05)

mm9

Number of total reads
18658063
Reads aligned (%)
84.9
Duplicates removed (%)
32.6
Number of peaks
549 (qval < 1E-05)

Base call quality data from DBCLS SRA